Run Statistics

MeasureValue
Report name MinION1D2_multiplex_FAH18855
Experiment groupUnknown
Sample IDMinION1D2_multiplex_FAH18855
Run ID33f721223cc4afbfc0e899b61ba65ef61a0797a6
Run dateWed Sep 27 14:55:42 UTC 2017
Run duration 172798h30m56s
Flowcell IDFAH18855
Flowcell product codeUnknown
Flowcell versionFLO-MIN107
KitSQK-LSK308
Yield2.07G
Read count1,825,754
N50 (bp)1,485
L501,396,373

Device and software information

MeasureValue
Device typeUnknown
Device IDMN17734
Device hostnamednacpc14
Device OSLinux 4.4.0-31-generic
Distribution versionUnknown
MinKNOW version1.7.14
Basecaller nameguppy-basecalling
Basecaller version2.3.5+53a111f
Basecaller analysis1dsqr_basecalling
Basecalling dateThu Mar 14 19:07:13 UTC 2019
Model filetemplate_r9.5_450bps_5mer_raw.jsn
ToulligQC version2.0b3
All reads Pass reads Fail reads
count 1,825,754 1,202,729 623,025
frequency 100.00 65.88 34.12
All reads 1D² reads 1D² pass reads 1D² fail reads 1D² pass barcoded 1D² fail barcoded
count 1,825,754 221,424 2,553 218,871 2,546 166,082
frequency 100.00 100.00 1.15 98.85 1.15 75.01
All reads Pass reads Fail reads
count 1,825,754 1,202,729 623,025
mean 1,131.37 1,290.02 825.10
std 1,520.61 894.77 2,255.66
min 5.00 82.00 5.00
25% 579.00 684.00 338.00
median 858.00 993.00 615.00
75% 1,429.00 1,616.00 1,032.00
max 636,961.00 32,140.00 636,961.00
All reads Pass reads Fail reads
count 221,424 2,553 218,871
mean 1,241.13 2,192.70 1,230.03
std 909.97 1,220.41 899.81
min 0.00 432.00 0.00
25% 656.00 1,292.00 654.00
median 963.00 1,932.00 956.00
75% 1,575.00 2,781.00 1,558.00
max 81,274.00 8,274.00 81,274.00
All reads Pass reads Fail reads
count 1,825,754 1,202,729 623,025
mean 7.36 8.51 5.14
std 1.93 0.85 1.43
min 1.00 7.00 1.00
25% 6.27 7.84 4.29
median 7.81 8.48 5.46
75% 8.79 9.15 6.33
max 12.07 12.07 6.00
1D² 1D² pass 1D² fail
count 221,424 2,553 218,871
mean 6.88 11.31 6.83
std 2.26 0.26 2.22
min 0.00 11.00 0.00
25% 5.29 11.11 5.27
median 6.87 11.24 6.82
75% 8.73 11.45 8.68
max 12.63 12.63 10.00

Channel occupancy of the flowcell

Barcode arrangement (%) 1D² read count
barcode01 19.11% 488
barcode02 25.03% 639
barcode03 12.46% 318
barcode04 15.43% 394
barcode05 14.06% 359
barcode07 13.63% 348
other barcodes 0.04% 1
unclassified 0.24% 6
Barcode arrangement (%) 1D² read count
barcode01 14.35% 31,302
barcode02 17.10% 37,303
barcode03 10.49% 22,879
barcode04 11.39% 24,842
barcode05 10.77% 23,500
barcode07 12.04% 26,256
other barcodes 0.61% 1,338
unclassified 23.26% 50,742