Report for MinION1D2_multiplex_FAH18855Run Statistics ⓘ
| Measure | Value |
|---|---|
| Report name | MinION1D2_multiplex_FAH18855 |
| Experiment group | Unknown |
| Sample ID | MinION1D2_multiplex_FAH18855 |
| Run ID | 33f721223cc4afbfc0e899b61ba65ef61a0797a6 |
| Run date | Wed Sep 27 14:55:42 UTC 2017 |
| Run duration | 172798h30m56s |
| Flowcell ID | FAH18855 |
| Flowcell product code | Unknown |
| Flowcell version | FLO-MIN107 |
| Kit | SQK-LSK308 |
| Yield | 2.07G |
| Read count | 1,825,754 |
| N50 (bp) | 1,485 |
| L50 | 1,396,373 |
Device and software information ⓘ
| Measure | Value |
|---|---|
| Device type | Unknown |
| Device ID | MN17734 |
| Device hostname | dnacpc14 |
| Device OS | Linux 4.4.0-31-generic |
| Distribution version | Unknown |
| MinKNOW version | 1.7.14 |
| Basecaller name | guppy-basecalling |
| Basecaller version | 2.3.5+53a111f |
| Basecaller analysis | 1dsqr_basecalling |
| Basecalling date | Thu Mar 14 19:07:13 UTC 2019 |
| Model file | template_r9.5_450bps_5mer_raw.jsn |
| ToulligQC version | 2.0b3 |
| All reads | Pass reads | Fail reads | |
|---|---|---|---|
| count | 1,825,754 | 1,202,729 | 623,025 |
| frequency | 100.00 | 65.88 | 34.12 |
| All reads | 1D² reads | 1D² pass reads | 1D² fail reads | 1D² pass barcoded | 1D² fail barcoded | |
|---|---|---|---|---|---|---|
| count | 1,825,754 | 221,424 | 2,553 | 218,871 | 2,546 | 166,082 |
| frequency | 100.00 | 100.00 | 1.15 | 98.85 | 1.15 | 75.01 |
| All reads | Pass reads | Fail reads | |
|---|---|---|---|
| count | 1,825,754 | 1,202,729 | 623,025 |
| mean | 1,131.37 | 1,290.02 | 825.10 |
| std | 1,520.61 | 894.77 | 2,255.66 |
| min | 5.00 | 82.00 | 5.00 |
| 25% | 579.00 | 684.00 | 338.00 |
| median | 858.00 | 993.00 | 615.00 |
| 75% | 1,429.00 | 1,616.00 | 1,032.00 |
| max | 636,961.00 | 32,140.00 | 636,961.00 |
| All reads | Pass reads | Fail reads | |
|---|---|---|---|
| count | 221,424 | 2,553 | 218,871 |
| mean | 1,241.13 | 2,192.70 | 1,230.03 |
| std | 909.97 | 1,220.41 | 899.81 |
| min | 0.00 | 432.00 | 0.00 |
| 25% | 656.00 | 1,292.00 | 654.00 |
| median | 963.00 | 1,932.00 | 956.00 |
| 75% | 1,575.00 | 2,781.00 | 1,558.00 |
| max | 81,274.00 | 8,274.00 | 81,274.00 |
| All reads | Pass reads | Fail reads | |
|---|---|---|---|
| count | 1,825,754 | 1,202,729 | 623,025 |
| mean | 7.36 | 8.51 | 5.14 |
| std | 1.93 | 0.85 | 1.43 |
| min | 1.00 | 7.00 | 1.00 |
| 25% | 6.27 | 7.84 | 4.29 |
| median | 7.81 | 8.48 | 5.46 |
| 75% | 8.79 | 9.15 | 6.33 |
| max | 12.07 | 12.07 | 6.00 |
| 1D² | 1D² pass | 1D² fail | |
|---|---|---|---|
| count | 221,424 | 2,553 | 218,871 |
| mean | 6.88 | 11.31 | 6.83 |
| std | 2.26 | 0.26 | 2.22 |
| min | 0.00 | 11.00 | 0.00 |
| 25% | 5.29 | 11.11 | 5.27 |
| median | 6.87 | 11.24 | 6.82 |
| 75% | 8.73 | 11.45 | 8.68 |
| max | 12.63 | 12.63 | 10.00 |
Channel occupancy of the flowcell ⓘ
| Barcode arrangement (%) | 1D² read count | |
|---|---|---|
| barcode01 | 19.11% | 488 |
| barcode02 | 25.03% | 639 |
| barcode03 | 12.46% | 318 |
| barcode04 | 15.43% | 394 |
| barcode05 | 14.06% | 359 |
| barcode07 | 13.63% | 348 |
| other barcodes | 0.04% | 1 |
| unclassified | 0.24% | 6 |
| Barcode arrangement (%) | 1D² read count | |
|---|---|---|
| barcode01 | 14.35% | 31,302 |
| barcode02 | 17.10% | 37,303 |
| barcode03 | 10.49% | 22,879 |
| barcode04 | 11.39% | 24,842 |
| barcode05 | 10.77% | 23,500 |
| barcode07 | 12.04% | 26,256 |
| other barcodes | 0.61% | 1,338 |
| unclassified | 23.26% | 50,742 |